Mathias´ Publications
From IFOMIS
Contents |
Books
Elmasri R, Doerr M, Brochhausen M, Han H (Eds.): Proceedings of the 2nd International Workshop on Ontologies and Information Systems for the Semantic Web, ONISW 2008, Napa Valley, California, USA, October 30, 2008. ACM 2008.
Hainaut, J.-L., Rundensteiner, E.A., Kirchberg, M., Bertolotto, M., Brochhausen, M., Chen, P., Sisaid Cherfi, S., Doerr, M., Han, H., Hartmann, S., Parsons, J., Poels, G., Rolland, C., Trujillo, J., Yu, E., Zimlanyi, E. (ed.): Advances in Conceptual Modeling - Foundations and Applications · ER 2007 Workshops CMLSA, FP-UML, ONISW, QoIS, RIGiM, SeCoGIS, Auckland, New Zealand, November 5-9, 2007, Proceedings. Springer.
Brochhausen M (2005) Wissenschaftsphilosophische Aspekte der Evolutionären Anthropologie. Studie zum Ursprung des anatomisch modernen Menschen. Remagen, Mainz.[1]
Articles in Refereed Journals
Brochhausen M, Burgun A, Ceusters W, Hasman A, Leong TY, Musen M, Oliveira JL, Peleg M, Rector A, Schulz S (2011) Discussion of “Biomedical Ontologies: Toward Scientific Debate”. Methods Inf Med. 2011 50 3: 217-236.
Brochhausen M, Spear AD, Cocos C, Weiler G, Martìn L, Anguita A, Stenzhorn H, Daskalaki E, Schera F, Schwarz U, Sfakianakis S; Kiefer S, Dörr M, Graf N, Tsiknakis M (2011) The ACGT Master Ontology and Its Applications - Towards an Ontology-Driven Cancer Research and Management System. Journal of Biomedical Informatics. J Biomed Inform. 2011 Feb;44(1):8-25. Epub 2010 May 11.
Smith B, Brochhausen M (2008) Putting Biomedical Ontologies to Work. Methods Inf Med. 2010 Mar 16;49(2):135-40.
Wagner M, Breiner T, Betz T, Bernhardt I, Pütz N, Weichert F, Shamaa, A, Brochhausen M, Awad S, Richards T, Groh A, Linder R, Landes CA (2008) Virtuelles Gewebe. Der Pathologe 2008, (Suppl 2) 29: 123-128.
Tsiknakis M, Brochhausen M, Nabrzyski J, Pucaski L, Potamias G, Desmedt C, Kafetzopoulos D (2008) A semantic grid infrastructure enabling integrated access and analysis of multilevel biomedical data in support of post-genomic clinical trials on Cancer. IEEE Transactions on Information Technology in Biomedicine, (Special issue on Bio-Grids) March 2008, Vol. 12, No. 2, 205-217
Articles in Other Journals
Brochhausen M (2008) How Upper Level Ontologies Deal With Functions and Other Realizable Entities. Biomedical Computation Review, Fall 2008, 25.[2]
Brochhausen M (2006) Don´t Panic! It´s the Tractatus. Philosophy Now 58, 13-14.
Brochhausen M (2005) Evolution und Gesellschaft von einem naturalistischen Standpunkt aus. Erwägen Wissen Ethik 16(3), 378-380.
Papers in Conference Proceedings
Brochhausen M, Blobel B (2011) Architectural approach for providing relations in biomedical terminologies and ontologies. Proceedings of MIE 2011. Stud Health Technol Inform. 2011; 169: 739-43.
Martin L, Anguita A, Graf N, Tsiknakis M, Brochhausen M, Rüping S, Bucur A, Sfakianakis S, Sengstag T, Buffa F, Stenzhorn H (2011) ACGT: Advancing Clinico-genomic trials on cancer - Four years of experience. Proceedings of MIE 2011. Stud Health Technol Inform. 2011;169:734-8.
Schneider L, Brochhausen M, Koepsell D (2011) On Some Best Practices in Large-Scale Ontology Development: The Chronious Ontology Suite as a Case Study. In: Formal Ontology Meets Industry 5th International Workshop Proceedings, IOS Press, Amsterdam, 28-38.
Stenzhorn H, Weiler G, Brochhausen M, Schera F, Kritsotakis V, Tsiknakis M, Kiefer S, Graf N (2010) The ObTiMA system - ontology-based managing of clinical trials. Stud Health Technol Inform. 2010;160(Pt 2):1090-4.
Grigonyte G, Brochhausen M, Martin L, Tsiknakis M, Haller J (2010) Evaluating Ontologies with NLP-Based Terminologies – A Case Study on ACGT and Its Master Ontology, In: Galton A, Mizoguchi R (eds.): Formal Ontology in Information Systems - Proceedings of the Sixth International Conference (FOIS 2010), IOS, Amsterdam, 131-142.
Brochhausen M, Slaughter L, Stenzhorn H, Graf N (2010) User-specific perspectives on ontologies. Stud Health Technol Inform. 2010; 156: 114-21.
Brochhausen M, Slaughter L (2009) Patient Empowerment by Ontology-Based Multi-lingual Systems, IFMBE Proceedings 25/XII, 439-42.
Brochhausen M, Weiler G, Martín L, Cocos C, Stenzhorn H, Graf N, Dörr M, Tsiknakis M, Smith B (2008) Applications of the ACGT Master Ontology on Cancer, R. Meersman, Z. Tari, and P. Herrero (Eds.): Proceedings of 4th International IFIP Workshop On Semantic Web & Web Semantics (OTM 2008: Workshops), LNCS 5333, 2008, 1046–1055.
Brochhausen M, Weiler G, Cocos C, Stenzhorn H, Graf N, Doerr M, Tsiknakis M (2008) The ACGT Master Ontology on Cancer - a New Terminology Source for Oncological Practice, In: Puuronen S, Pechenizkiy M, Tsymbal A, Lee DJ (eds.): Proceedings of the 21st IEEE International Symposium on Computer-Based Medical Systems, IEEE Computer Society, Los Alamitos, 324-329.
Smith B, Brochhausen M (2008) Establishing and Harmonizing Ontologies in an Interdisciplinary Health Care and Clinical Research Environment.In: Blobel B, Pharow P, Nerlich M (eds.): eHealth: Combining Health Telematics, Telemedicine, Biomedical Engineering and Bioinformatics on the Edge. Global Expert Summit Textbook. (Health, Technology and Informatics, 134), IOS Press, Amsterdam, 219-234.[3]
Martin L, Anguita L, Maojo V, Bonsma E, Bucur AID, Vrijnsen J, Brochhausen M, Cocos C, Stenzhorn H, Tsiknakis M, Doerr M, Kondylakis H. Ontology Based Integration of Distributed and Heterogeneous Data Sources in ACGT; In: Azevedo L, Londral AR, editors. Proceedings of the First International Conference on Health Informatics, HEALTHINF 2008, Funchal, Madeira, Portugal, January 28-31, 2008, Volume 1, pp 301-306. INSTICC - Institute for Systems and Technologies of Information, Control and Communication 2008.
Weiler W, Brochhausen M, Graf N, Hoppe A, Schera F, Kiefer S (2007) Ontology Based Data Management Systems for post-genomic clinical Trials within an European Grid Infrastructure for Cancer Research, In Proceedings of the 29th Annual International Conference of the IEEE EMBS, Lyon, France, August 23-26, 2007, pp. 6434-6437.
Brochhausen M (2006) The Derives_From Relation in Biomedical Ontologies" Studies in Health Technology and Informatics, 124 (MIE 2006), 769-774.[4]
Brochhausen C, Brochhausen M, Seyberth HW (2003) In wessen bestem Interesse? Mögliche finanzielle Interessenkonflikte in der klinischen Forschung und ihre Relevanz für die Pädiatrie. In: Wiesemann C, Dörries A, Wolfslast G, Simon A (Hg.): Das Kind als Patient. Ethische Konflikte zwischen Kindeswohl und Kindeswille. Frankfurt am Main, 251-263.
Brochhausen M (2002) Understanding Recent Apes As Parallel Models in Paleoanthropology. Anthropologie XL/2, 115-118.
Brochhausen C, Brochhausen M, Seyberth HW (2002) Pädiatrie zwischen Patientenschutz und Therapiesicherheit – eine interdisziplinäre Herausforderung. In: Alt KW & Kemkes-Grottenthaler A (Hg.): Kinderwelten. Anthropologie – Geschichte - Kulturvergleich. Köln, Weimar, Wien, 2002, 458-471.
Kerstjens DP, Brochhausen M (2000) Krankheiten als natürliche Arten. In: Schultz M et al.: Schnittstelle Mensch – Umwelt in Vergangenheit, Gegenwart und Zukunft. Göttingen, 448-449.
Chapters in Books
Brochhausen M (2001) Krankheit als subjektives Ereignis. In: Kemkes-Grottenthaler A & Henke W (Hg.): Pein und Plagen. Aspekte einer Historischen Epidemiologie. Gelsenkirchen, 13-20.
Brochhausen C, Brochhausen M (2001) Relativistische Wissenschaftskritik als epistemologischer Ansatz in der Historischen Epidemiologie. In: Kemkes-Grottenthaler A & Henke W (Hg.): Pein und Plagen. Aspekte einer Historischen Epidemiologie. Gelsenkirchen, 59-72.
Book Reviews
Brochhausen M (2007) Lainie Friedman Ross: "Children in Medical Research. Access versus Protection". Homo: Journal of Comparative Human Biology, 193-4.
Brochhausen M (2006) Ruth Millikan: "Language: A Biological Model". Homo: Journal of Comparative Human Biology, 177-8.
Brochhausen M (2005) M. Hagner: „Geniale Gehirne. Zur Geschichte der Elitegehirnforschung“. Homo: Journal of Comparative Human Biology, 250.
Brochhausen M (2005) G. Grupe, K. Christiansen, I. Schröder, U. Wittwer-Backofen: „Anthropologie. Ein einführendes Lehrbuch“. Anthropos : International Review of Anthropology and Linguistics 100/02, 605-606.
Translations
Bittner T, Smith B (2008) Granulare Partitionen (aus dem Englischen von M. Brochhausen). In: Jansen L, Smith B, editors. Biomedizinische Ontologien. Wissen strukturieren für den Informatik-Einsatz. Zürich: vdf Hochschulverlag.
Invited Talks
Brochhausen M (2010) The Relevance of Philosophy to Applied Ontology. Grand Valley State University Philosophy Colloquium, Grand Rapids MI, USA, November 12, 2010.
Brochhausen M (2010) Ist Speziation ein Prozessmuster?, Bioprozesse – Logik und Ontologie lebender Systeme, Rostock, Germany, March 25-27, 2010.
Brochhausen M (2010) Ontology-based Semantic Modelling, 3rd CALLepSO Workshop: Open Semantic Services, Brussels, Belgium, January 26, 2010.
Brochhausen M (2010) Ethical Benefit from Semantic Interoperability in eHealth, Department of Philosophy, Faculty of Technology, Policy and Management, Delft University of Technology, Netherlands, January 18, 2010.
Brochhausen M (2010) Ontologies and Medical Records. Monumentum.doc, 11th Annual Labont Workshop, Torino, Italy, January 11-12.
Brochhausen M (2009) Clinical Reality Representation - Creation, Formalization, Maintenance. Department of Medical and Health Sciences, Linköping University, December 15, 2009
Brochhausen M (2009) Semantic Services im epSOS-Projekt: Statusbericht. Jahrestagung 2009 der HL7-Benutzergruppe in Deutschland e. V., Göttingen, Germany, October 28-30.
Brochhausen M, Slaughter L (2009) Patient Empowerment By Ontology-Based Multi-lingual Systems, Medical Physics and Biomedical Engineering World Conference 2009, Munich, Germany, September 7-12.
Brochhausen M (2009) Ontology of Paleobiology, (Half-day tutorial). International Conference on Biomedical Ontologies, Buffalo NY, USA, July 20, 1:30 pm.[5]
Brochhausen M (2008) Ontologie-basierte IT-Systeme für die klinische Forschung. Institut für Pathologie, Johannes Gutenberg-Universität, Mainz, Germany, 28 October, 2008, 5 pm.
Brochhausen M (2008) Exploiting Ontologies in Clinical Research and Practice. Nation Center for Electronic Patient Records (NSEP), Trondheim, Norway, October 15, 2008.
Brochhausen M (2008) How Can We Utilise Ontologies to Maximise Our Data/Knowledge Base? 3rd Annual DKI (Discovery Knowledge & Informatics), Brussels, Belgium, 15-17 September, 2008.
Brochhausen M (2008) Biomedical Ontologies: Principles and Perspectives of Exploitation – A critical review. Special Session on Personalised Medicine: Current Trends and Scientific Challenges, TEMU 2008, International Conference on Telecommunications and Mutlimedia, Ierapetra, Greece, 16.07.2008.
Brochhausen M, Smith B (2007) Establishing and Harmonising Ontologies in an Interdisciplinary Health Care Environment. CeHR International Conference: eHealth: Combining Health Telematics, Telemedicine, Biomedical Engineering and Bioinformatics to the Edge, Regensburg, Germany, 04.12.2007.
Brochhausen M (2007) Speciation and Biological Change. Philosophy of Biology Conference. Department of Philosophy, University at Buffalo, Buffalo, USA, 29.09.2007.
Brochhausen M (2007) Bones, Stones, and Artifacts: Representing Bioarchaeological Reality. Department of Anthropology Colloquium, University at Buffalo, Buffalo, USA, 28.09.2007.
Brochhausen M (2007) Building a Cancer Ontology - Bringing Together Clinical Practice and Ontological Theory. Center for Cognitive Science Colloquia, University at Buffalo, Buffalo USA, 26.09.2007.
Brochhausen M (2006) Towards a Cancer Ontology: Present Status and Challenges. ICT Technologies for Cancer Research and Management in the Post-Genomic Era: Status and Challenges, ITAB 2006, Ioannina, Greece, 25.10.2006
Brochhausen M (2006) Why We Need an Ontology of Paleontology: A Case Study of the Mladec Remains. 2006 Paleoanthropology Meeting, San Juan, Puerto Rico, 25.04.2006.
Brochhausen M (2006) Evolutionäre Zeit im molekularen Zeitalter. Ringvorlesung „Zeit“ der Fachschaft Philosophie der Johannes Gutenberg-Universität Mainz, 04.01.2006.
Brochhausen M (2005) Mythen in Quines Wissenschaftsphilosophie. Philosophisches Institut der Universität des Saarlandes, 15.11.2005.
Brochhausen M (2004) Der Ursprung des anatomisch modernen Menschen. Museumsverein Hildesheim, 01.03.2004.
Congress Talks & Posters
Blobel B, Brochhausen M, Gonzalez Serrano C, Lopez D, Oemig F (2012) A System-Theoretical, Architecture-Based Approach to Ontology Management. Medical Informatics Europe (MIE) 2012, Pisa, Italy, August 26-29 (accepted)
Schneider L, Brochhausen M (2011) The CHRONIOUS Ontology Suite: Methodology and Design Principles. International Conference on Biomedical Ontologies, ICBO 2011, Buffalo NY, July 26, 2011; Proceedings:167-174.
Schulz S, Brochhausen M, Hoehndorf R (2011) Higgs Bosons, Mars Missions, and Unicorn Delusions: How to Deal with Terms of Dubious Reference in Scientific Ontologies.International Conference on Biomedical Ontologies, ICBO 2011, Buffalo NY, July 26, 2011; Proceedings:183-190.
Blobel B, Brochhausen M, Oemig F (2010) Unterstützt HL7 die interdisziplinäre Zusammenarbeit? In: Schmücker P, Ellsässer K-H, Hayna S (Hrsg.) Effiziente und wirtschaftliche Gesundheitsversorgung von heute und morgen – nur mit Medizinischer Dokumentation, Medizinischer Informatik, Medizinischer Biometrie und Epidemiologie. 55. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS) e.V. Mannheim, 5.-9.9.2010. Abstractband S.502-503.
Brochhausen M, Blobel B (2010) Problems in Representing Relationships in Medical Terminologies and Ontologies and their Resolution through Adopting the GCM Point of View. In: Schmücker P, Ellsässer K-H, Hayna S (Hrsg.) Effiziente und wirtschaftliche Gesundheitsversorgung von heute und morgen – nur mit Medizinischer Dokumentation, Medizinischer Informatik, Medizinischer Biometrie und Epidemiologie. 55. Jahrestagung der Deutschen Gesellschaft für Medizinische Informatik, Biometrie und Epidemiologie (GMDS) e.V. Mannheim, 5.-9.9.2010. Abstractband S.504-505.
Brochhausen M, Grigonyte G (2009) Applying Corpus-Based Ontology Evaluation – The Case of the ACGT Master Ontology. Workshop des GI-Arbeitskreises Ontologien in Biomedizin und Lebenswissenschaften (OBML), Leipzig, Germany, November 25, 2009.
Brochhausen M, Weiler G, Schera F, Rauch J, Graf N, Kiefer S (2009) Ontology-based Clinical Trial Management System (ObTiMA), International Conference on Biomedical Ontologies, Buffalo NY, USA, July 24.[6]
Brochhausen Mathias, Weiler Gabriele, Cocos Cristian, Stenzhorn Holger, Graf Norbert, Doerr Martin, Tsiknakis Manolis (2008) The ACGT Master Ontology on Cancer - a New Terminology Source for Oncological Practice, IEEE CBMS 2008: 21st IEEE International Symposium on Computer-Based Medical Systems, Jyväskylä, Finland, June 17-19, 2008.
Brochhausen M, Brochhausen C, Kirkpatrick CJ (2008) Using Formal Ontology in Analyzing Complex Systems in Pathology - Data Integration and Standardization. 92. Jahrestagung der Deutschen Gesellschaft für Pathologie e.V., May 16, Berlin, Germany.
Brochhausen Mathias (2008) The ACGT Master Ontology on Cancer: a necessary tool to cover semantics on clinical trials on cancer. ACGT (Advancing Clinico-Genomic Trials) Workshop, European Breast Cancer Conference 6 (EBCC 6), Berlin, Germany, April 15, 2008.
Graf N, Weiler G, Brochhausen M, Schera F, Hoppe A, Tsiknakis M, Kiefer S (2007) The Importance of an Ontology Based Clinical Data Management System (OCDMS) for Clinico-Genomic Trials in ACGT (Advancing Clinico-Genomic Trials on Cancer), November 1-3, SIOP Mumbai, Mumbai, India.
Brochhausen M (2007) The European Centre for Ontological Research. Future Perspectives in Biomedical Ontology. MedNet 2007, October 9, Leipzig Germany. [7]
Weiler G, Brochhausen M, Graf N, Schera F, Hoppe A, Kiefer (2007) Ontology Based Data Management Systems for Post-Genomic Clinical Trials within a European Grid Infrastructure for Cancer Research. 29th IEEE EMBS Annual International Conference, August 23-26, Lyon, France.
Brochhausen M, Schwarz U (2007) Species Essentialism Without Attributes: Processes, Patterns and Biological Ontologies. ISHPSSB Meeting 2007, July 25-29, Exeter, United Kingdom.[8]
Brochhausen M (2006) The Derives_from Relation in Biomedical Ontologies. Medical Informatics Europe MIE 2006, Maastricht, The Netherlands.[9]
Schwarz U, Brochhausen M (2006) Ontology and Layman´s Interpretation of Biomedical Terminology. European Summer School in Biomedical Informatics, 07.07.2006, Balatonfüred, Hungary.
Brochhausen C, Brochhausen M, Delius A, Kirkpatrick CJ, Seyberth HW (2004) Expression of Cyclooxygenases and Prostaglandin E2 Receptors EP1 and EP2 in Growth Plate Chondrocytes in vitro and in situ – PGE2 Dependent Proliferation of Chondrocytes. 9th Bienal Congress European Society for Developmental Perinatal & Paediatric Pharmacology. June 16 – 20 Marburg, Germany.
Brochhausen M (2003) The Human-Animal Distinction As Part of Man's Construction of `Nature´. 2003 Meeting of the International Society of History, Philosophy and Social Studies of Biology, 16.-20. Juli 2003, Wien, Austria.
Brochhausen C, Brochhausen M, Kirkpatrick CJ (2003) Technisierung oder soziokulturelles Erbe - epistemologische Aspekte zum Verständnis der Appendizitis. 86. Jahrestagung der Deutschen Gesellschaft für Geschichte der Medizin, Naturwissenschaft und Technik, Freiberg, Deutschland
Brochhausen C, Brochhausen M, Seyberth HW (2002) Klinische Forschung in der Pädiatrie im Spannungsfeld zwischen Akademie und Industrie. Jahrestagung der Akademie für Ethik in der Medizin, Tutzing, Germany.
Brochhausen M (2001) Rezente Menschenaffen als Parallelmodell in der Paläoanthropologie. 7. Kongress der Gesellschaft für Primatologie, 30. September-4. Oktober, Zürich, Switzerland.
Brochhausen C, Brochhausen M, Seyberth HW (2001) Prioritäten der Gesundheitsversorgung und die therapeutischen Waisen in der Pädiatrie – eine interdisziplinäre Herausforderung. Jahrestagung der Akademie für Ethik in der Medizin e.V., Hamburg, Germany.
Brochhausen C, Brochhausen M (2000) Versuch über ein neues ärztliches Selbstverständnis. Jahrestagung 2000 der Akademie für Ethik in der Medizin, 5.-7. Oktober, Frankfurt am Main, Germany.
Brochhausen C, Brochhausen M (1997) Dialog zwischen Medizin und Philosophie im Spannungsfeld der Epidemiologie. Workshop "Epidemiologie", Arbeitsgemeinschaft Paläoanthropologie und Prähistorische Anthropologie der Gesellschaft für Anthropologie, 9.-10. Oktober, Göttingen, Germany.
Tutorials
Ontological Realism for Biomedical Ontologies and Electronic Health Records (with Werner Ceusters and Stefan Schulz). MIE 2011 Workshop, Aug 29, 2011, Oslo, Norway.
Introduction to Ontology Development and Tools – Part I: First Steps in Ontology Development (with Amanda Hicks)[10], International Conference on Biomedical Ontologies, ICBO 2011, Buffalo NY, July 26, 2011.
An Introduction to the Protege Ontology Editor[11], An Introduction to Ontology Building[12], Buffalo NY, October 23, 2010.
A Practical Exercise in Ontology Building, An Introduction to Ontology Building[13], Buffalo NY, October 23, 2010.
The Ontology of Paleobiology[14], International Conference on Biomedical Ontologies (ICBO), Buffalo NY, July 20, 2009.
