Biomedical Ontology

• Bittner Thomas, Donnelly Maureen, Winter S.: "Ontology and Semantic Interoperability", in: Prosperi D., Zlatanova S. (eds.): Large-Scale 3-D Data Integration: Problems and Challenges, CRC Press, Boca Raton, Florida, 2006
• Brochhausen Mathias: "The Derives_From Relation in Biomedical Ontologies", in: (MIE 2006) Studies in Health Technology and Informatics, 124 (2006) , 769-774
• Ceusters Werner, Elkin Peter, Smith Barry: "Referent Tracking: The Problem of Negative Findings", in: (MIE 2006) Studies in Health Technology and Informatics, 124 (2006) , 741-6
• Ceusters Werner, Smith Barry: "HL7 RIM: An Incoherent Standard", in: (MIE 2006) Studies in Health Technology and Informatics, 124 (2006) , 133-138
• Ceusters Werner, Smith Barry: "Strategies for Referent Tracking in Electronic Health Records", in: Journal of Biomedical Informatics, 39 (2006) 3, 362-378
• Ceusters Werner, Smith Barry: "Strategies for Referent Tracking in Electronic Health Records", in: Journal of Biomedical Informatics, 39 (2006) 3, 362-378
• Ceusters Werner, Smith Barry: "Referent Tracking for Treatment Optimisation in Schizophrenic Patients: A Case Study in Applying Philosophical Ontology to Diagnostic Algorithms", in: Journal of Web Semantics, (4)3 (2006) , 1-45
• Cimino James J., Smith Barry: "Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference", in: Journal of Biomedical Informatics, 39 (2006) 3, 249-251
• Fellbaum Christiane, Hahn Udo, Smith Barry: "Towards New Information Resources for Public Health – From WordNet to Medical WordNet", in: Journal of Biomedical Informatics, 39 (2006) 3, 321-332
• Fellbaum Christiane, Hahn Udo, Smith Barry: "Towards New Information Resources for Public Health – From WordNet to Medical WordNet", in: Journal of Biomedical Informatics, 39 (2006) 3, 321-332
• Fielding James Matthew, Marwede Dirk: "The Anatomy of the Neurological Image: Towards an Applied Onto-Psychiatry", in: Proceedings of the 9th International Conference on Philosophy, Psychiatry, and Psychology, Leiden, Netherlands, 2006, 90-93
• Fielding James Matthew, Marwede Dirk: "The Image as Spatial Region: Location and Adjacency of Image Entities", in: Proceedings of the International Conference of Formal Ontology and Information Systems (FOIS 2006), IOS Press, Amsterdam, 2006, 89-100
• Fielding James Matthew, Marwede Dirk: "Four Ontological Forms of Radiological Diagnostics", in: Proceedings of Medical Informatics Europe (MIE2006), 2006, 761-766
• Jansen Ludger: "It's Chicken and Eggs again: Vagueness, Quasi-Species, and Evolution", in: Conceptus 36 (2004), published in, 2006, 71-77
• Jansen Ludger: "The Ontology of Tendencies and Medical Information Sciences", in: Johansson Ingvar, Klein Bertin, Roth-Berghofer Thomas (eds.): WSPI 2006: Contributions to the Third International Workshop on Philosophy and Informatics, IFOMIS, Saarbrücken, 2006, 1-14
• Johansson Ingvar: "Bioinformatics and Biological Reality", in: Journal of Biomedical Informatics, 39 (2006) , 274-287
• Kumar Anand, Smith Barry, Pisanelli Domenico M., Gangemi Aldo, Stefanelli Mario: "Clinical Guidelines as Plans: An Ontological Theory", in: Methods of Information in Medicine, 45 (2006) 2, 204-210
• Kumar Anand, Yip Lina, Smith Barry, Grenon Pierre: "Bridging the Gap between Medical and Bioinformatics: An Ontological Case Study in Colon Carcinoma", in: Computers in Biology and Medicine, 36 (2006) 7-8, 694-711
• Kumar Anand, Yip Lina, Smith Barry, Grenon Pierre: "Bridging the Gap between Medical and Bioinformatics: An Ontological Case Study in Colon Carcinoma", in: Computers in Biology and Medicine, 36 (2006) 7-8, 694-711
• Köhler Jacob, Munn Katherine, Rüegg Alexander, Skusa Andre, Smith Barry: "Quality Control for Terms and Definitions in Ontologies and Taxonomies", in: BMC Bioinformatics, 7 (2006) , 212 (online pub.)
• Rubin D. L., Lewis Suzanna, Mungall Chris, Misra S., Westerfield M., Ashburner Michael, Sim I., Chute Christopher, Solbrig H., Storey M. A., Smith Barry, Richter J. D., Noy N. F., Musen Mark: "The National Center for Biomedical Ontology: Advancing Biomedicine through Structured Organization of Scientific Knowledge", in: Omics: A Journal of Integrative Biology, 10(2) (2006) , 185-198
• Smith Barry: "From Concepts to Clinical Reality: An Essay on the Benchmarking of Biomedical Terminologies", in: Journal of Biomedical Informatics, 39 (2006) 3, 288-298
• Smith Barry: "From Concepts to Clinical Reality: An Essay on the Benchmarking of Biomedical Terminologies", in: Journal of Biomedical Informatics, 39 (2006) 3, 288-298
• Smith Barry: "Sechzehn Tage: Wann beginnt ein menschliches Leben?", in: Imaguire G., Schneider Christian (eds.): Untersuchungen zur Ontologie, Philosophia, Munich, 2006
• Whetzel Patricia, Brinkman Ryan, Causton Helen, Fan Liju, Fostel Jennifer, Fragoso Gilberto, Heiskanen Mervi, Hernandez-Boussard Tina, Morrison Norman, Parkinson Helen, Rocca-Serra Philippe, Sansone Susanna-Assunta, Schober Daniel, Smith Barry, Stevens Robert, Stoeckert Chris, Taylor Chris, White Joe: "The Development of FuGO – An Ontology for Functional Genomics Experiments", in: Omics: A Journal of Integrative Biology, 10(2) (2006) , 199-204

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Formal Ontology

• Hennig Boris: "Naturteleologie, reduktiv", in: Philosophisches Jahrbuch, 2006, 296-315
• Hennig Boris: "Social Facts Explained and Presupposed", in: Psarros N. et al.: Facets of Sociality, Ontos Verlag, 2006, 243-263
• Jansen Ludger: "Staatliche Toleranz und staatliche Wertorientierung”", in: Wo hört die Toleranz auf? (= Preisschriften des Forschungsinstituts für Philosophie Hannover), Wallstein, Göttingen, 2006, 20-62
• Jansen Ludger: "Aristoteles’ Kategorie des Relativen zwischen Dialektik und Ontologie", in: Philosophiegeschichte und logische Analyse, 9 (2006) , 79-104
• Jansen Ludger: "Attribuer des dispositions", in: Kistler Max, Gnassounou Bruno (eds.): Dispositions et pouvoirs causaux, Presses Universitaires de France, 2006
• Jansen Ludger: "Attribuer des dispositions", in: Gnassounou Bruno, Kistler Max (eds.): Les dispositions en philosophie et en sciences, CNRS editions, Paris, 2006, 89-106
• Johansson Ingvar: "Inference Rules, Emergent Wholes and Superveneint Properties", in: tripleC, 4 (2006) 2, 127-135
• Johansson Ingvar: "Four Kinds of 'is_a' Relations", in: IFOMIS REPORTS, 2006, 47-62
• Johansson Ingvar: "Review of E. J. Lowe, The Four-Category Ontology", in: dialectica, 60 (2006) 4, 513-518
• Johansson Ingvar: "Mereology and Ordinary Language - Reply to Varzi", in: Applied Ontology, 1 (2006) 2, 157-162
• Johansson Ingvar: "Identity Puzzles and Supervenient Identities", in: Metaphysica. International Journal for Ontology and Metaphysics, 7 (2006) , 7-33
• Johansson Ingvar: "How Do Non-Joint Commitments Come Into Being? An Attempt at Cultural Naturalism", in: Psarros N. et al.: Facets of Sociality, ontos Verlag, Frankfurt, 2006, 135-149
• Johansson Ingvar: "The Constituent Function Analysis of Functions", in: Koskinen Heikki J. et al.: Science – A Challenge to Philosophy. Papers presented at the XV Internordic Philosophical Symposium 2004, Peter Lang, Frankfurt am Main, 2006, 35-45
• Mulligan Kevin, Simons Peter, Smith Barry: "What’s wrong with contemporary philosophy?", in: Topoi, 25 (1-2) (2006) , 63-67
• Smith Barry: "On the Phases of Reism", in: Chrudzimski Arkadius, Łukasiewicz D. (eds.): Actions, Products, and Things. Brentano and the Polish Philosophy, ontos, Frankfurt am Main, 2006, 115-176
• Smith Barry: "John Searle", in: Savidan Pierre (ed.): Les sciences humaines, PUF, Paris, 2006, 1061-62
• Smith Barry: "Why Polish Philosophy Does Not Exist", in: Jadacki J. J., Pasniczek J. (eds.): The Lvov-Warsaw School: The New Generation (Poznan Studies in the Philosophy of Sciences and Humanities), 89 (2006) , 19-39
• Smith Barry, Mark David M.: "Geographical Categories: An Ontological Retrospective", in: Fisher P. (ed.): Classics from the International Journal of Geographical Information Science, Taylor and Francis, London, 2006, 507–512
• Sorokine A., Bittner Thomas, Renschler C.: "Ontological Investigation of Ecosystem Hierarchies and Formal Theory for Multiscale Ecosystem Classifications", in: geoinformatica, 10 (2006) 3, 313-335

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