Basic Formal Ontology (BFO)
Users
Below you find an alphabetic list of ontologies and institutions/groups using BFO. If you want to be added, just contact us!
Ontologies
- ACGT Master Ontology (ACGT MO): represent the domain of cancer research and management in a computationally tractable manner
- AFO Foundational Ontology
- Biomedical Ethics Ontology
- Biomedical Grid Terminology (BiomedGT): open, collaboratively developed terminology for translational research
- BioTop: A Biomedical Top-Domain Ontology
- BIRNLex: controlled terminology for annotation of BIRN data sources
- Cell Cycle Ontology: application ontology for the representation and integrated analysis of the cell cycle process
- Cell Ontology: designed as a structured controlled vocabulary for cell types
- Chemical Entities of Biological Interest (ChEBI): freely available dictionary of molecular entities focused on .small. chemical compounds
- Cognitive Paradigm Ontology
- Common Anatomy Reference Ontology (CARO): anatomical structures in all organisms
- Drug Interaction Ontology (DIO): ontology-driven inferences of possible drug-drug Interactions
- Dynamic Earth Sciences Ontologies: Process and Event Ontologies
- Environment Ontology: an ontology that supports the annotation of the environment of any organism or biological sample
- Evolution Ontology (EO)
- FlyBase: enhancing Drosophila Gene Ontology annotations
- Foundational Model of Anatomy (FMA): structure of the mammalian and in particular the human body (Further reading)
- Gene Ontology (GO): attributes of gene products in all organisms
- Infectious Disease Ontology at the Duke University Medical Center
- Interdisciplinary Prostate Ontology Project (IPOP)
- medicognos: medical knowledge and workflow management framework with integrated DSS for quality, safety and disease management applications
- MIRO and IRbase: IT Tools for the Epidemiological Monitoring of Insecticide Resistance in Mosquito Disease Vectors
- Nanoparticle Ontology (NPO): Ontology for Cancer Nanotechnology Research
- Neuroscience Information Framework Standard (NIFSTD) Ontology: a collection of OWL modules covering distinct domains of biomedical reality
- Neural Electromagnetic Ontologies (NEMO): Ontology-based Tools for Representation and Integration of Event-related Brain Potentials
- An Ontology of Clinical Research (OCRe)
- Ontology-Based eXtensible Data Model (OBX)
- Ontology of Data Mining Investigationsi (OntoDM)
- Ontology for Biomedical Investigations (OBI): design, protocol, instrumentation, and analysis applied in biomedical investigations
- Ontology for General Medical Science
- Petrochemical Ontology
- Phenotypic Quality Ontology (PaTO): qualities of biomedical entities
- Proteomics data and process provenance ontology (ProPreO): bioinformatics for glycan expression, integrated technology resource for biomedical glycomics
- Protein Ontology (PRO): protein types and modifications classified on the basis of evolutionary relationships
- RNA Ontology (RnaO): RNA features, interactions and motifs
- Senselab Ontology with applications to NeuronDB and BrainPharm
- Sequence Ontology (SO): features and properties of nucleic sequences
- Sleep Domain Ontology
- Subcellular Anatomy Ontology (SAO) of NCMIR
- Translaftional Medicine Ontology
- Vaccine Ontology (VO)
- yOWL: ontology-driven knowledge base for yeast biologists
- Zebrafish Anatomical Ontology (ZAO): anatomical structures in D. rerio
Institutions, Groups and Projects
- AstraZeneca - Clinical Information Science
- Berkeley Bioinformatics Open-Source Projects (BBOP)
- BioPAX-OBO
- BIRN Ontology Task Force (BIRN OTF) from the Bioinformatics Research Network (BIRN)
- Computer Task Group Inc.
- DOQS: Data-Oriented Quality Solutions
- DSpace at NTNUA
- Dublin Institute of Technology - School of Computing
- Duke University Laboratory for Computational Immunology
- Dumontier Lab
- INRIA Lorraine Research Unit
- Kobe University, Graduate School of Medicine, Department of Sociomedical Informatics
- Language and Computing
- National Center for Multi-Source Information Fusion
- Ontology Research Group at the New York State Center of Excellence in Bioinformatics & Life Sciences
- Ontology, Logic and Technology Unit
- Qualitative Spatiotemporal Reasoning Unit
- Referent Tracking Unit
- Ontology Works
- openEHR
- Praxis: EMR research on interoperability and query of clinical records
- REMINE
- Science Commons - Neurocommons
- University of Texas Southwestern Medical Center
